Genomics AI Agent Workflow release

I’ve published the Python code for my experimental genomics rare disease AI agent workflow on GitHub:

https://github.com/jeffjjohnston/genomics-rare-disease-ai-workflow

All you’ll need to get started is an OpenAI API key and a set of Nirvana-annotated genomic variants. If you have a VCF file, I’ve included instructions for annotating it with Nirvana inside a Docker container.

Be sure to read my individual blog posts discussing the workflow components:

• Can an AI agent help diagnose genetic diseases?
• Implementing the HPO Agent
• Implementing the Gene Agent
• Implementing the Variant Agent: Part 1
• Implementing the Variant Agent: Part 2