Genomics AI Agent Workflow release
Announces the release of the open-source genomics rare disease agent workflow on GitHub. Notes that an OpenAI API key and Nirvana-annotated variants are all that's needed to experiment with the agents. Points to instructions for annotating a VCF and links back to the posts that explain each workflow component in depth.
I’ve published the Python code for my experimental genomics rare disease AI agent workflow on GitHub:
https://github.com/jeffjjohnston/genomics-rare-disease-ai-workflow
All you’ll need to get started is an OpenAI API key and a set of Nirvana-annotated genomic variants. If you have a VCF file, I’ve included instructions for annotating it with Nirvana inside a Docker container.
Be sure to read my individual blog posts discussing the workflow components: